Genome-Scale Algorithm

This is a note for the book Genome-Scale Algorithm Design: Biological Sequence Analysis in the Era of High-Throughput Sequencing (2nd edition). Exercise 1.2  In a given organism some codons are used more frequently than others to encode the same amino acid. Given the observed frequency of every codon in a species, normalize it into probabilities and […]

This is a note for the book Genome-Scale Algorithm Design: Biological Sequence Analysis in the Era of High-Throughput Sequencing. Exercise 1.1 Write a program that lists all the DNA sequences that encode a given protein sequence. From the wikipedia page DNA and RNA codon tables I got the inverse table for the standard genetic code